Protein Information

Protein ZmHB42
ZmHB42 is a protein in the Homeobox family.
Information
TF Name:	ZmHB42
Species:	Maize
TF Family:	Homeobox
Gene Name(Synonym):	HB42
Uniprot ID:	A0A1D6PDQ1
Subgenome:	1

ZmHB42 is a protein in the Homeobox family. NOTE the "Uniprot ID" shown on the right is a placeholder for testing. The interactive structure shown is based on that id.

Overview of domains present in v5 transcripts
	PF00046	PF02183
Zm00001eb226570_T001

Protein-DNA Interactions

Meme Logos for Maize v4 Gene IDs

Gene ID	Type	Sequence	FIMO	Position
Zm00001d014628	DAPseq	sequence	fimo	position
Zm00001d014628	DAPseq	sequence	fimo	position
Zm00001d014628	ChIPseq	sequence	fimo	position
Zm00001d014628	PChIPseq	sequence	fimo	position

Interactions where ZmHB42 is the regulator

There are no protein-dna interactions that fit this criteria.

Interactions where ZmHB42 is the target
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There are 70 protein-dna interactions that fit this criteria. download excel sheet

Zm00001eb226570_T001 from maize genome v5

Amino Acid Sequence
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Color Coding: None Secondary Structure Domain

MYSTREEEGVGKSWLGLGIGGGSGGCDLMQRNNRPPVQFDLLFPPQGVVEGVAASKKAEKGGGGRKRLKVVTGTADEDGQ
QPPGARKKLRLTKAQSTLLEDTFRAHSILSNAQKQELARQVDLSARQVEVWFQNRRARTKLKQTEADCEILKRCCESLTG
ENQRLRLELAQLQGSEAGLYLQSSFPPLAAAMASVCPSCDKVITVASGGETSGRSSTSYSS

Secondary Structure Color Code
BEND	region with high backbone curvature without specific hydrogen bonding
HELX_LH_PP_P	left-handed polyproline helix
HELX_RH_3T_P	right-handed 3-10 helix
HELX_RH_AL_P	right-handed alpha helix
HELX_RH_PI_P	right-handed pi helix
STRN	beta strand
TURN_TY1_P	type I turn
UNDETERMINED	no data available

Domains Present
PF00046
PF02183
PF02183
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Nucleotide Sequence
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ACTTGCTTACTACTAGTCAATCTAC...

GRMZM2G477415_T01 from maize genome v3

Related TFome: pUT4734

Amino Acid Sequence
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Nucleotide Sequence
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ATGTACAGCACTCGTGAGGAAGAGG...

Zm00001d014628_T001 from maize genome v4

Amino Acid Sequence
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Nucleotide Sequence
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GCCAGATAGTTGTAGTCGCCCGCCA...

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Protein ZmHB42

Protein-DNA Interactions

Meme Logos for Maize v4 Gene IDs

Interactions where ZmHB42 is the regulator

Interactions where ZmHB42 is the target
Expand

Zm00001eb226570_T001 from maize genome v5

Amino Acid Sequence
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Color Coding: None Secondary Structure Domain

Nucleotide Sequence
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Expand

GRMZM2G477415_T01 from maize genome v3

Amino Acid Sequence
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Nucleotide Sequence
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Expand

Zm00001d014628_T001 from maize genome v4

Amino Acid Sequence
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Nucleotide Sequence
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